Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

Jana Grote; Cansu Bayindirli; Kristin Bergauer; Paula Carpintero de Moraes; Huan Chen; Lindsay D'Ambrosio; Bethanie Edwards; Beatriz Fernández-Gómez; Mariam Hamisi; Ramiro Logares; Dan Nguyen; Yoshimi M. Rii; Emily Saeck; Charles Schutte; Brittany Widner; Matthew J. Church; Grieg F. Steward; David M. Karl; Edward F. Delong; John M. Eppley; Stephan C. Schuster; Nikos C. Kyrpides; Michael S. Rappé

doi:10.4056/sigs.1854551

Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

Jana Grote
, Cansu Bayindirli
, Kristin Bergauer
, Paula Carpintero de Moraes
, Huan Chen
, Lindsay D'Ambrosio
, Bethanie Edwards
, Beatriz Fernández-Gómez
, Mariam Hamisi
, Ramiro Logares
, Dan Nguyen
, Yoshimi M. Rii
, Emily Saeck
, Charles Schutte
, Brittany Widner
, Matthew J. Church
, Grieg F. Steward
, David M. Karl
, Edward F. Delong
, John M. Eppley

Stephan C. Schuster, Nikos C. Kyrpides, Michael S. Rappé

Flathead Lake Biological Station

Research output: Contribution to journal › Article › peer-review

24 Scopus citations

Abstract

Strain HIMB100 is a planktonic marine bacterium in the class Alphaproteobacteria. This strain is of interest because it is one of the first known isolates from a globally ubiquitous clade of marine bacteria known as SAR116 within the family Rhodospirillaceae. Here we describe preliminary features of the organism, together with the draft genome sequence and annotation. This is the second genome sequence of a member of the SAR116 clade. The 2,458,945 bp genome contains 2,334 protein-coding and 42 RNA genes.

Original language	English
Pages (from-to)	269-278
Number of pages	10
Journal	Standards in Genomic Sciences
Volume	5
Issue number	3
DOIs	https://doi.org/10.4056/sigs.1854551
State	Published - 2011

Funding

We gratefully acknowledge the support of the Gordon and Betty Moore Foundation, which funded sequencing of this genome. Annotation was performed as part of the 2010 Summer Course in Microbial Oceanography (http://cmore.soest.hawaii.edu/summercourse/2010/ and Technology (SOEST), and the Center for Microbial Oceanography: Research and Education (C-MORE), a National Science Foundation-funded Science and Technology Center (award No. EF0424599). This is SOEST contribution 8364 and HIMB contribution 1459.

Funder number
0424599

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 14 Life Below Water

Keywords

Genome
Marine bacterioplankton
Proteorhodopsin
Rhodospirillaceae
SAR116

Access to Document

10.4056/sigs.1854551

Cite this

Grote, J., Bayindirli, C., Bergauer, K., de Moraes, P. C., Chen, H., D'Ambrosio, L., Edwards, B., Fernández-Gómez, B., Hamisi, M., Logares, R., Nguyen, D., Rii, Y. M., Saeck, E., Schutte, C., Widner, B., Church, M. J., Steward, G. F., Karl, D. M., Delong, E. F., ... Rappé, M. S. (2011). Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria. Standards in Genomic Sciences, 5(3), 269-278. https://doi.org/10.4056/sigs.1854551

@article{d6359259b140453ea695ddb2450efd91,

title = "Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria",

abstract = "Strain HIMB100 is a planktonic marine bacterium in the class Alphaproteobacteria. This strain is of interest because it is one of the first known isolates from a globally ubiquitous clade of marine bacteria known as SAR116 within the family Rhodospirillaceae. Here we describe preliminary features of the organism, together with the draft genome sequence and annotation. This is the second genome sequence of a member of the SAR116 clade. The 2,458,945 bp genome contains 2,334 protein-coding and 42 RNA genes.",

keywords = "Genome, Marine bacterioplankton, Proteorhodopsin, Rhodospirillaceae, SAR116",

author = "Jana Grote and Cansu Bayindirli and Kristin Bergauer and \{de Moraes\}, \{Paula Carpintero\} and Huan Chen and Lindsay D'Ambrosio and Bethanie Edwards and Beatriz Fern{\'a}ndez-G{\'o}mez and Mariam Hamisi and Ramiro Logares and Dan Nguyen and Rii, \{Yoshimi M.\} and Emily Saeck and Charles Schutte and Brittany Widner and Church, \{Matthew J.\} and Steward, \{Grieg F.\} and Karl, \{David M.\} and Delong, \{Edward F.\} and Eppley, \{John M.\} and Schuster, \{Stephan C.\} and Kyrpides, \{Nikos C.\} and Rapp{\'e}, \{Michael S.\}",

note = "Funding Information: We gratefully acknowledge the support of the Gordon and Betty Moore Foundation, which funded sequencing of this genome. Annotation was performed as part of the 2010 Summer Course in Microbial Oceanography (http://cmore.soest.hawaii.edu/summercourse/2010/ and Technology (SOEST), and the Center for Microbial Oceanography: Research and Education (C-MORE), a National Science Foundation-funded Science and Technology Center (award No. EF0424599). This is SOEST contribution 8364 and HIMB contribution 1459.",

year = "2011",

doi = "10.4056/sigs.1854551",

language = "English",

volume = "5",

pages = "269--278",

journal = "Standards in Genomic Sciences",

issn = "1944-3277",

publisher = "BioMed Central Ltd",

number = "3",

}

Grote, J, Bayindirli, C, Bergauer, K, de Moraes, PC, Chen, H, D'Ambrosio, L, Edwards, B, Fernández-Gómez, B, Hamisi, M, Logares, R, Nguyen, D, Rii, YM, Saeck, E, Schutte, C, Widner, B, Church, MJ, Steward, GF, Karl, DM, Delong, EF, Eppley, JM, Schuster, SC, Kyrpides, NC & Rappé, MS 2011, 'Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria', Standards in Genomic Sciences, vol. 5, no. 3, pp. 269-278. https://doi.org/10.4056/sigs.1854551

TY - JOUR

T1 - Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

AU - Grote, Jana

AU - Bayindirli, Cansu

AU - Bergauer, Kristin

AU - de Moraes, Paula Carpintero

AU - Chen, Huan

AU - D'Ambrosio, Lindsay

AU - Edwards, Bethanie

AU - Fernández-Gómez, Beatriz

AU - Hamisi, Mariam

AU - Logares, Ramiro

AU - Nguyen, Dan

AU - Rii, Yoshimi M.

AU - Saeck, Emily

AU - Schutte, Charles

AU - Widner, Brittany

AU - Church, Matthew J.

AU - Steward, Grieg F.

AU - Karl, David M.

AU - Delong, Edward F.

AU - Eppley, John M.

AU - Schuster, Stephan C.

AU - Kyrpides, Nikos C.

AU - Rappé, Michael S.

N1 - Funding Information: We gratefully acknowledge the support of the Gordon and Betty Moore Foundation, which funded sequencing of this genome. Annotation was performed as part of the 2010 Summer Course in Microbial Oceanography (http://cmore.soest.hawaii.edu/summercourse/2010/ and Technology (SOEST), and the Center for Microbial Oceanography: Research and Education (C-MORE), a National Science Foundation-funded Science and Technology Center (award No. EF0424599). This is SOEST contribution 8364 and HIMB contribution 1459.

PY - 2011

Y1 - 2011

N2 - Strain HIMB100 is a planktonic marine bacterium in the class Alphaproteobacteria. This strain is of interest because it is one of the first known isolates from a globally ubiquitous clade of marine bacteria known as SAR116 within the family Rhodospirillaceae. Here we describe preliminary features of the organism, together with the draft genome sequence and annotation. This is the second genome sequence of a member of the SAR116 clade. The 2,458,945 bp genome contains 2,334 protein-coding and 42 RNA genes.

AB - Strain HIMB100 is a planktonic marine bacterium in the class Alphaproteobacteria. This strain is of interest because it is one of the first known isolates from a globally ubiquitous clade of marine bacteria known as SAR116 within the family Rhodospirillaceae. Here we describe preliminary features of the organism, together with the draft genome sequence and annotation. This is the second genome sequence of a member of the SAR116 clade. The 2,458,945 bp genome contains 2,334 protein-coding and 42 RNA genes.

KW - Genome

KW - Marine bacterioplankton

KW - Proteorhodopsin

KW - Rhodospirillaceae

KW - SAR116

UR - https://www.scopus.com/pages/publications/84863155147

U2 - 10.4056/sigs.1854551

DO - 10.4056/sigs.1854551

M3 - Article

AN - SCOPUS:84863155147

SN - 1944-3277

VL - 5

SP - 269

EP - 278

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

IS - 3

ER -

Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

Abstract

Funding

UN SDGs

Keywords

Access to Document

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