Next-Generation AUC: Analysis of Multiwavelength Analytical Ultracentrifugation Data

  • Gary E. Gorbet
  • , Joseph Z. Pearson
  • , Aysha K. Demeler
  • , Helmut Cölfen
  • , Borries Demeler

Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review

39 Scopus citations

Abstract

We describe important advances in methodologies for the analysis of multiwavelength data. In contrast to the Beckman-Coulter XL-A/I ultraviolet-visible light detector, multiwavelength detection is able to simultaneously collect sedimentation data for a large wavelength range in a single experiment. The additional dimension increases the data density by orders of magnitude, posing new challenges for data analysis and management. The additional data not only improve the statistics of the measurement but also provide new information for spectral characterization, which complements the hydrodynamic information. New data analysis and management approaches were integrated into the UltraScan software to address these challenges. In this chapter, we describe the enhancements and benefits realized by multiwavelength analysis and compare the results to those obtained from the traditional single-wavelength detector. We illustrate the advances offered by the new instruments by comparing results from mixtures that contain different ratios of protein and DNA samples, representing analytes with distinct spectral and hydrodynamic properties. For the first time, we demonstrate that the spectral dimension not only adds valuable detail, but when spectral properties are known, individual components with distinct spectral properties measured in a mixture by the multiwavelength system can be clearly separated and decomposed into traditional datasets for each of the spectrally distinct components, even when their sedimentation coefficients are virtually identical.

Original languageEnglish
Title of host publicationMethods in Enzymology
PublisherAcademic Press Inc.
Pages27-47
Number of pages21
DOIs
StatePublished - 2015

Publication series

NameMethods in Enzymology
Volume562
ISSN (Print)0076-6879
ISSN (Electronic)1557-7988

Funding

We acknowledge the invaluable contributions from our colleagues at the Texas Advanced Computing Center, in particular Chris Hempel, who have provided important assistance with the use of XSEDE supercomputing resources. We also would like to thank the Science Gateway group at Indiana University (Marlon Pierce, Raminder Singh, and Suresh Marru) for their help with implementing the parallel submissions. This research was in part supported by NSF Grant ACI-1339649 to B.D., and computer time on XSEDE resources was funded by NSF allocation Grant TG-MCB070039N to B.D. J.P. and H.C. acknowledge financial support by the Center for Applied Photonics (CAP) at the University of Konstanz.

Funder number
ACI-1339649, TG-MCB070039N

    Keywords

    • Analytical ultracentrifugation
    • Hydrodynamic analysis
    • Multiwavelength detector
    • Optical detector development
    • Spectral analysis
    • UV-Vis absorbance

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