Spatial trends of genetic variation of domestic ruminants in Europe

Denis Laloë; Katayoun Moazami-Goudarzi; Johannes A. Lenstra; Paolo Ajmone Marsan; Pedro Azor; Roswitha Baumung; Daniel G. Bradley; Michael W. Bruford; Javier Cañón; Gaudenz Dolf; Susana Dunner; Georg Erhardt; Godfrey Hewitt; Juha Kantanen; Gabriela Obexer-Ruff; Ingrid Olsaker; Clemen Rodellar; Alessio Valentini; Pamela Wiener; P. Dobi; A. Hoda; S. Matraninon; F. Fischerleitner; G. Mommens; P. Baret; A. Fadlaoui; L. E. Holm; M. A.A. El-Barody; P. Taberlet; G. Luikart; A. Beja-Pereira; P. England; M. Trommetter; A. Oulmouden; H. Levéziel; O. Jann; C. Weimann; E. M. Prinzenberg; C. Peter; B. Harlizius; C. Looft; E. Kalm; J. Roosen; A. Georgoudis; C. Ligda; L. Fésüs; D. E. Machugh; A. R. Freeman; R. Negrini; E. Milanesi; G. Canali; M. C. Savarese; C. Marchitelli; L. Pariset; I. Cappuccio; M. Zanotti; G. Ceriotti; M. Cicogna; P. Crepaldi; F. Pilla; A. Bruzzone; D. Iamartino; A. Carta; T. Sechi; G. D'urso; S. Bordonaro; D. Marletta; M. Abo-Shehada; I. J. Nijman; M. Felius; R. Niznikowski; A. Vlaic; T. Kiselyova; N. Marzanov; Z. Ivanova; R. Popov; I. Ammosov; M. Ćinkulov; P. Zaragoza; I. Martín-Burriel; A. Sanchez; J. Piedrafita; E. Rodero; K. Sandberg; G. Obexer-Ruff; M. L. Glowatzki; R. Caloz; S. Joost; O. Ertugrul; I. Togan; J. L. Williams; D. Burton; T. Perez; S. Dalamitra

doi:10.3390/d2060932

Spatial trends of genetic variation of domestic ruminants in Europe

Denis Laloë
, Katayoun Moazami-Goudarzi
, Johannes A. Lenstra
, Paolo Ajmone Marsan
, Pedro Azor
, Roswitha Baumung
, Daniel G. Bradley
, Michael W. Bruford
, Javier Cañón
, Gaudenz Dolf
, Susana Dunner
, Georg Erhardt
, Godfrey Hewitt
, Juha Kantanen
, Gabriela Obexer-Ruff
, Ingrid Olsaker
, Clemen Rodellar
, Alessio Valentini
, Pamela Wiener
, P. Dobi

A. Hoda, S. Matraninon, F. Fischerleitner, G. Mommens, P. Baret, A. Fadlaoui, L. E. Holm, M. A.A. El-Barody, P. Taberlet, G. Luikart, A. Beja-Pereira, P. England, M. Trommetter, A. Oulmouden, H. Levéziel, O. Jann, C. Weimann, E. M. Prinzenberg, C. Peter, B. Harlizius, C. Looft, E. Kalm, J. Roosen, A. Georgoudis, C. Ligda, L. Fésüs, D. E. Machugh, A. R. Freeman, R. Negrini, E. Milanesi, G. Canali, M. C. Savarese, C. Marchitelli, L. Pariset, I. Cappuccio, M. Zanotti, G. Ceriotti, M. Cicogna, P. Crepaldi, F. Pilla, A. Bruzzone, D. Iamartino, A. Carta, T. Sechi, G. D'urso, S. Bordonaro, D. Marletta, M. Abo-Shehada, I. J. Nijman, M. Felius, R. Niznikowski, A. Vlaic, T. Kiselyova, N. Marzanov, Z. Ivanova, R. Popov, I. Ammosov, M. Ćinkulov, P. Zaragoza, I. Martín-Burriel, A. Sanchez, J. Piedrafita, E. Rodero, K. Sandberg, G. Obexer-Ruff, M. L. Glowatzki, R. Caloz, S. Joost, O. Ertugrul, I. Togan, J. L. Williams, D. Burton, T. Perez, S. Dalamitra

Flathead Lake Biological Station

INRA, UMR1313, Genetique Animale et Biologie Integrative
Utrecht University
Catholic University of the Sacred Heart
University of Córdoba
University of Natural Resources and Life Sciences, Vienna
Trinity College Dublin
Cardiff University
Complutense University
University of Bern
Justus Liebig University Giessen
University of East Anglia
Luke Natural Resources Institute Finland
Norwegian University of Life Sciences
Autonomous University of Barcelona
University of Milan
University of Edinburgh
Faculty of Agriculture
Dr. Van Haeringen Polygen
Université catholique de Louvain
Aarhus University
Minia University
CNRS
Université Grenoble Alpes
INRAE
University of Veterinary Medicine Hannover, Foundation
Kiel University
Aristotle University of Thessaloniki
National Agricultural Research Foundation
Hungarian University of Agriculture and Life Sciences
Tuscia University
University of Molise
Istituto Zootecnico e Caseario per la Sardegna
University of Catania
Jordan University of Science and Technology
Warsaw University of Life Sciences
Babes-Bolyai University
St. Petersburgh-Pushkin
All-Russian Research Institute of Animal Husbandry
Yakutian Research Institute of Agricultural Sciences
University of Novi Sad
University of Zaragoza
Swedish University of Agricultural Sciences
Swiss Federal Institute of Technology Lausanne
Ankara University
Middle East Technical University
University of Wales

Research output: Contribution to journal › Article › peer-review

20 Scopus citations

Abstract

The introduction of livestock species in Europe has been followed by various genetic events, which created a complex spatial pattern of genetic differentiation. Spatial principal component (sPCA) analysis and spatial metric multidimensional scaling (sMDS) incorporate geography in multivariate analysis. This method was applied to three microsatellite data sets for 45 goat breeds, 46 sheep breeds, and 101 cattle breeds from Europe, Southwest Asia, and India. The first two sPCA coordinates for goat and cattle, and the first sPCA coordinate of sheep, correspond to the coordinates of ordinary PCA analysis. However, higher sPCA coordinates suggest, for all three species, additional spatial structuring. The goat is the most geographically structured species, followed by cattle. For all three species, the main genetic cline is from southeast to northwest, but other geographic patterns depend on the species. We propose sPCA and sMDS to be useful tools for describing the correlation of genetic variation with geography.

Original language	English
Pages (from-to)	932-945
Number of pages	14
Journal	Diversity
Volume	2
Issue number	6
DOIs	https://doi.org/10.3390/d2060932
State	Published - Jun 1 2010

Keywords

Cattle
Diversity
Goat
Moran's I
Multidimensional Scaling
PCA
Sheep
Spatial structure
sPCA

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10.3390/d2060932

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Laloë, D., Moazami-Goudarzi, K., Lenstra, J. A., Marsan, P. A., Azor, P., Baumung, R., Bradley, D. G., Bruford, M. W., Cañón, J., Dolf, G., Dunner, S., Erhardt, G., Hewitt, G., Kantanen, J., Obexer-Ruff, G., Olsaker, I., Rodellar, C., Valentini, A., Wiener, P., ... Dalamitra, S. (2010). Spatial trends of genetic variation of domestic ruminants in Europe. Diversity, 2(6), 932-945. https://doi.org/10.3390/d2060932

@article{4a090c9d098a420890231cf4b24138b2,

title = "Spatial trends of genetic variation of domestic ruminants in Europe",

abstract = "The introduction of livestock species in Europe has been followed by various genetic events, which created a complex spatial pattern of genetic differentiation. Spatial principal component (sPCA) analysis and spatial metric multidimensional scaling (sMDS) incorporate geography in multivariate analysis. This method was applied to three microsatellite data sets for 45 goat breeds, 46 sheep breeds, and 101 cattle breeds from Europe, Southwest Asia, and India. The first two sPCA coordinates for goat and cattle, and the first sPCA coordinate of sheep, correspond to the coordinates of ordinary PCA analysis. However, higher sPCA coordinates suggest, for all three species, additional spatial structuring. The goat is the most geographically structured species, followed by cattle. For all three species, the main genetic cline is from southeast to northwest, but other geographic patterns depend on the species. We propose sPCA and sMDS to be useful tools for describing the correlation of genetic variation with geography.",

keywords = "Cattle, Diversity, Goat, Moran's I, Multidimensional Scaling, PCA, Sheep, Spatial structure, sPCA",

author = "Denis Lalo{\"e} and Katayoun Moazami-Goudarzi and Lenstra, \{Johannes A.\} and Marsan, \{Paolo Ajmone\} and Pedro Azor and Roswitha Baumung and Bradley, \{Daniel G.\} and Bruford, \{Michael W.\} and Javier Ca{\~n}{\'o}n and Gaudenz Dolf and Susana Dunner and Georg Erhardt and Godfrey Hewitt and Juha Kantanen and Gabriela Obexer-Ruff and Ingrid Olsaker and Clemen Rodellar and Alessio Valentini and Pamela Wiener and P. Dobi and A. Hoda and S. Matraninon and F. Fischerleitner and G. Mommens and P. Baret and A. Fadlaoui and Holm, \{L. E.\} and El-Barody, \{M. A.A.\} and P. Taberlet and G. Luikart and A. Beja-Pereira and P. England and M. Trommetter and A. Oulmouden and H. Lev{\'e}ziel and O. Jann and C. Weimann and Prinzenberg, \{E. M.\} and C. Peter and B. Harlizius and C. Looft and E. Kalm and J. Roosen and A. Georgoudis and C. Ligda and L. F{\'e}s{\"u}s and Machugh, \{D. E.\} and Freeman, \{A. R.\} and R. Negrini and E. Milanesi and G. Canali and Savarese, \{M. C.\} and C. Marchitelli and L. Pariset and I. Cappuccio and M. Zanotti and G. Ceriotti and M. Cicogna and P. Crepaldi and F. Pilla and A. Bruzzone and D. Iamartino and A. Carta and T. Sechi and G. D'urso and S. Bordonaro and D. Marletta and M. Abo-Shehada and Nijman, \{I. J.\} and M. Felius and R. Niznikowski and A. Vlaic and T. Kiselyova and N. Marzanov and Z. Ivanova and R. Popov and I. Ammosov and M. {\'C}inkulov and P. Zaragoza and I. Mart{\'i}n-Burriel and A. Sanchez and J. Piedrafita and E. Rodero and K. Sandberg and G. Obexer-Ruff and Glowatzki, \{M. L.\} and R. Caloz and S. Joost and O. Ertugrul and I. Togan and Williams, \{J. L.\} and D. Burton and T. Perez and S. Dalamitra",

year = "2010",

month = jun,

day = "1",

doi = "10.3390/d2060932",

language = "English",

volume = "2",

pages = "932--945",

journal = "Diversity",

issn = "1424-2818",

publisher = "Multidisciplinary Digital Publishing Institute (MDPI)",

number = "6",

}

Laloë, D, Moazami-Goudarzi, K, Lenstra, JA, Marsan, PA, Azor, P, Baumung, R, Bradley, DG, Bruford, MW, Cañón, J, Dolf, G, Dunner, S, Erhardt, G, Hewitt, G, Kantanen, J, Obexer-Ruff, G, Olsaker, I, Rodellar, C, Valentini, A, Wiener, P, Dobi, P, Hoda, A, Matraninon, S, Fischerleitner, F, Mommens, G, Baret, P, Fadlaoui, A, Holm, LE, El-Barody, MAA, Taberlet, P, Luikart, G, Beja-Pereira, A, England, P, Trommetter, M, Oulmouden, A, Levéziel, H, Jann, O, Weimann, C, Prinzenberg, EM, Peter, C, Harlizius, B, Looft, C, Kalm, E, Roosen, J, Georgoudis, A, Ligda, C, Fésüs, L, Machugh, DE, Freeman, AR, Negrini, R, Milanesi, E, Canali, G, Savarese, MC, Marchitelli, C, Pariset, L, Cappuccio, I, Zanotti, M, Ceriotti, G, Cicogna, M, Crepaldi, P, Pilla, F, Bruzzone, A, Iamartino, D, Carta, A, Sechi, T, D'urso, G, Bordonaro, S, Marletta, D, Abo-Shehada, M, Nijman, IJ, Felius, M, Niznikowski, R, Vlaic, A, Kiselyova, T, Marzanov, N, Ivanova, Z, Popov, R, Ammosov, I, Ćinkulov, M, Zaragoza, P, Martín-Burriel, I, Sanchez, A, Piedrafita, J, Rodero, E, Sandberg, K, Obexer-Ruff, G, Glowatzki, ML, Caloz, R, Joost, S, Ertugrul, O, Togan, I, Williams, JL, Burton, D, Perez, T & Dalamitra, S 2010, 'Spatial trends of genetic variation of domestic ruminants in Europe', Diversity, vol. 2, no. 6, pp. 932-945. https://doi.org/10.3390/d2060932

TY - JOUR

T1 - Spatial trends of genetic variation of domestic ruminants in Europe

AU - Laloë, Denis

AU - Moazami-Goudarzi, Katayoun

AU - Lenstra, Johannes A.

AU - Marsan, Paolo Ajmone

AU - Azor, Pedro

AU - Baumung, Roswitha

AU - Bradley, Daniel G.

AU - Bruford, Michael W.

AU - Cañón, Javier

AU - Dolf, Gaudenz

AU - Dunner, Susana

AU - Erhardt, Georg

AU - Hewitt, Godfrey

AU - Kantanen, Juha

AU - Obexer-Ruff, Gabriela

AU - Olsaker, Ingrid

AU - Rodellar, Clemen

AU - Valentini, Alessio

AU - Wiener, Pamela

AU - Dobi, P.

AU - Hoda, A.

AU - Matraninon, S.

AU - Fischerleitner, F.

AU - Mommens, G.

AU - Baret, P.

AU - Fadlaoui, A.

AU - Holm, L. E.

AU - El-Barody, M. A.A.

AU - Taberlet, P.

AU - Luikart, G.

AU - Beja-Pereira, A.

AU - England, P.

AU - Trommetter, M.

AU - Oulmouden, A.

AU - Levéziel, H.

AU - Jann, O.

AU - Weimann, C.

AU - Prinzenberg, E. M.

AU - Peter, C.

AU - Harlizius, B.

AU - Looft, C.

AU - Kalm, E.

AU - Roosen, J.

AU - Georgoudis, A.

AU - Ligda, C.

AU - Fésüs, L.

AU - Machugh, D. E.

AU - Freeman, A. R.

AU - Negrini, R.

AU - Milanesi, E.

AU - Canali, G.

AU - Savarese, M. C.

AU - Marchitelli, C.

AU - Pariset, L.

AU - Cappuccio, I.

AU - Zanotti, M.

AU - Ceriotti, G.

AU - Cicogna, M.

AU - Crepaldi, P.

AU - Pilla, F.

AU - Bruzzone, A.

AU - Iamartino, D.

AU - Carta, A.

AU - Sechi, T.

AU - D'urso, G.

AU - Bordonaro, S.

AU - Marletta, D.

AU - Abo-Shehada, M.

AU - Nijman, I. J.

AU - Felius, M.

AU - Niznikowski, R.

AU - Vlaic, A.

AU - Kiselyova, T.

AU - Marzanov, N.

AU - Ivanova, Z.

AU - Popov, R.

AU - Ammosov, I.

AU - Ćinkulov, M.

AU - Zaragoza, P.

AU - Martín-Burriel, I.

AU - Sanchez, A.

AU - Piedrafita, J.

AU - Rodero, E.

AU - Sandberg, K.

AU - Obexer-Ruff, G.

AU - Glowatzki, M. L.

AU - Caloz, R.

AU - Joost, S.

AU - Ertugrul, O.

AU - Togan, I.

AU - Williams, J. L.

AU - Burton, D.

AU - Perez, T.

AU - Dalamitra, S.

PY - 2010/6/1

Y1 - 2010/6/1

N2 - The introduction of livestock species in Europe has been followed by various genetic events, which created a complex spatial pattern of genetic differentiation. Spatial principal component (sPCA) analysis and spatial metric multidimensional scaling (sMDS) incorporate geography in multivariate analysis. This method was applied to three microsatellite data sets for 45 goat breeds, 46 sheep breeds, and 101 cattle breeds from Europe, Southwest Asia, and India. The first two sPCA coordinates for goat and cattle, and the first sPCA coordinate of sheep, correspond to the coordinates of ordinary PCA analysis. However, higher sPCA coordinates suggest, for all three species, additional spatial structuring. The goat is the most geographically structured species, followed by cattle. For all three species, the main genetic cline is from southeast to northwest, but other geographic patterns depend on the species. We propose sPCA and sMDS to be useful tools for describing the correlation of genetic variation with geography.

AB - The introduction of livestock species in Europe has been followed by various genetic events, which created a complex spatial pattern of genetic differentiation. Spatial principal component (sPCA) analysis and spatial metric multidimensional scaling (sMDS) incorporate geography in multivariate analysis. This method was applied to three microsatellite data sets for 45 goat breeds, 46 sheep breeds, and 101 cattle breeds from Europe, Southwest Asia, and India. The first two sPCA coordinates for goat and cattle, and the first sPCA coordinate of sheep, correspond to the coordinates of ordinary PCA analysis. However, higher sPCA coordinates suggest, for all three species, additional spatial structuring. The goat is the most geographically structured species, followed by cattle. For all three species, the main genetic cline is from southeast to northwest, but other geographic patterns depend on the species. We propose sPCA and sMDS to be useful tools for describing the correlation of genetic variation with geography.

KW - Cattle

KW - Diversity

KW - Goat

KW - Moran's I

KW - Multidimensional Scaling

KW - PCA

KW - Sheep

KW - Spatial structure

KW - sPCA

UR - https://www.scopus.com/pages/publications/77958529371

U2 - 10.3390/d2060932

DO - 10.3390/d2060932

M3 - Article

AN - SCOPUS:77958529371

SN - 1424-2818

VL - 2

SP - 932

EP - 945

JO - Diversity

JF - Diversity

IS - 6

ER -

Spatial trends of genetic variation of domestic ruminants in Europe

Abstract

Keywords

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